[R-br] ERRO ao instalar pacote rJava

[Emerson Cotta Bodevan]

Prezados Daniel e Benilton,

obrigado pela ajuda. O problema foi resolvido com os comandos:

sudo apt-get build-dep r-cran-rJava
sudo R CMD javareconf

Atenciosamente,
Emerson.

2012/10/29 Benilton Carvalho <beniltoncarvalho em gmail.com>

> vc tentou a sugestao que lhe foi dada na mensagem de erro?
>
> configure: error: Java Development Kit (JDK) is missing or not registered
> in R
> Make sure R is configured with full Java support (including JDK). Run
> R CMD javareconf
> as root to add Java support to R.
>
> If you don't have root privileges, run
> R CMD javareconf -e
> to set all Java-related variables and then install rJava.
>
>
> e o q obteve?
> b
>
> On 29 October 2012 16:15, Emerson Cotta Bodevan <bodevan.ec em gmail.com>
> wrote:
> > Prezados,
> >
> > minha intenção é instalar o pacote speedR. No entanto, ao tentar
> instalá-lo,
> > aparece a mensagem de que está faltando o rJava.
> >
> > Bom... ao tentar instalar o rJava aparece a mensagem abaixo:
> >
> >> install.packages()
> > Carregando a interface Tcl/Tk ... pronto
> > --- Please select a CRAN mirror for use in this session ---
> > Installing package(s) into
> > ‘/home/ecbodevan/R/i686-pc-linux-gnu-library/2.14’
> > (as ‘lib’ is unspecified)
> > tentando a URL '
> http://cran-r.c3sl.ufpr.br/src/contrib/rJava_0.9-3.tar.gz'
> > Content type 'application/x-gzip' length 537153 bytes (524 Kb)
> > URL aberta
> > ==================================================
> > downloaded 524 Kb
> >
> > * installing *source* package ‘rJava’ ...
> > ** package ‘rJava’ successfully unpacked and MD5 sums checked
> > checking for gcc... gcc -std=gnu99
> > checking for C compiler default output file name... a.out
> > checking whether the C compiler works... yes
> > checking whether we are cross compiling... no
> > checking for suffix of executables...
> > checking for suffix of object files... o
> > checking whether we are using the GNU C compiler... yes
> > checking whether gcc -std=gnu99 accepts -g... yes
> > checking for gcc -std=gnu99 option to accept ISO C89... none needed
> > checking how to run the C preprocessor... gcc -std=gnu99 -E
> > checking for grep that handles long lines and -e... /bin/grep
> > checking for egrep... /bin/grep -E
> > checking for ANSI C header files... yes
> > checking for sys/wait.h that is POSIX.1 compatible... yes
> > checking for sys/types.h... yes
> > checking for sys/stat.h... yes
> > checking for stdlib.h... yes
> > checking for string.h... yes
> > checking for memory.h... yes
> > checking for strings.h... yes
> > checking for inttypes.h... yes
> > checking for stdint.h... yes
> > checking for unistd.h... yes
> > checking for string.h... (cached) yes
> > checking sys/time.h usability... yes
> > checking sys/time.h presence... yes
> > checking for sys/time.h... yes
> > checking for unistd.h... (cached) yes
> > checking for an ANSI C-conforming const... yes
> > checking whether time.h and sys/time.h may both be included... yes
> > configure: checking whether gcc -std=gnu99 supports static inline...
> > yes
> > checking whether setjmp.h is POSIX.1 compatible... yes
> > checking whether sigsetjmp is declared... yes
> > checking whether siglongjmp is declared... yes
> > checking Java support in R... present:
> > interpreter : '/usr/bin/java'
> > archiver    : ''
> > compiler    : ''
> > header prep.: ''
> > cpp flags   : ''
> > java libs   : '-L/usr/lib/jvm/java-6-openjdk-i386/jre/lib/i386/server
> > -L/usr/lib/jvm/java-6-openjdk-i386/jre/lib/i386
> > -L/usr/lib/jvm/java-6-openjdk-i386/jre/../lib/i386
> > -L/usr/java/packages/lib/i386 -L/usr/lib/i386-linux-gnu/jni
> > -L/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -L/usr/lib/jni -L/lib
> > -L/usr/lib -ljvm'
> > configure: error: Java Development Kit (JDK) is missing or not
> registered in
> > R
> > Make sure R is configured with full Java support (including JDK). Run
> > R CMD javareconf
> > as root to add Java support to R.
> >
> > If you don't have root privileges, run
> > R CMD javareconf -e
> > to set all Java-related variables and then install rJava.
> >
> > ERROR: configuration failed for package ‘rJava’
> > * removing ‘/home/ecbodevan/R/i686-pc-linux-gnu-library/2.14/rJava’
> >
> > The downloaded packages are in
> >     ‘/tmp/RtmpTC1ljU/downloaded_packages’
> > Mensagens de aviso perdidas:
> > In install.packages() :
> >   installation of package ‘rJava’ had non-zero exit status
> >
> >
> > Alguém sabe como resolver? Agradeço qualquer ajuda.
> >
> > Atenciosamente,
> > Emerson.
> >
> > OBS.: ao tentar instalar o speedR e o rJava, eu rodava o R como "sudo".
> Uso
> > o ubuntu.
> >
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