[R-br] ERRO ao instalar pacote rJava

Benilton Carvalho beniltoncarvalho em gmail.com
Segunda Outubro 29 15:08:02 BRST 2012


vc tentou a sugestao que lhe foi dada na mensagem de erro?

configure: error: Java Development Kit (JDK) is missing or not registered in R
Make sure R is configured with full Java support (including JDK). Run
R CMD javareconf
as root to add Java support to R.

If you don't have root privileges, run
R CMD javareconf -e
to set all Java-related variables and then install rJava.


e o q obteve?
b

On 29 October 2012 16:15, Emerson Cotta Bodevan <bodevan.ec em gmail.com> wrote:
> Prezados,
>
> minha intenção é instalar o pacote speedR. No entanto, ao tentar instalá-lo,
> aparece a mensagem de que está faltando o rJava.
>
> Bom... ao tentar instalar o rJava aparece a mensagem abaixo:
>
>> install.packages()
> Carregando a interface Tcl/Tk ... pronto
> --- Please select a CRAN mirror for use in this session ---
> Installing package(s) into
> ‘/home/ecbodevan/R/i686-pc-linux-gnu-library/2.14’
> (as ‘lib’ is unspecified)
> tentando a URL 'http://cran-r.c3sl.ufpr.br/src/contrib/rJava_0.9-3.tar.gz'
> Content type 'application/x-gzip' length 537153 bytes (524 Kb)
> URL aberta
> ==================================================
> downloaded 524 Kb
>
> * installing *source* package ‘rJava’ ...
> ** package ‘rJava’ successfully unpacked and MD5 sums checked
> checking for gcc... gcc -std=gnu99
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc -std=gnu99 accepts -g... yes
> checking for gcc -std=gnu99 option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -std=gnu99 -E
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ANSI C header files... yes
> checking for sys/wait.h that is POSIX.1 compatible... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for string.h... (cached) yes
> checking sys/time.h usability... yes
> checking sys/time.h presence... yes
> checking for sys/time.h... yes
> checking for unistd.h... (cached) yes
> checking for an ANSI C-conforming const... yes
> checking whether time.h and sys/time.h may both be included... yes
> configure: checking whether gcc -std=gnu99 supports static inline...
> yes
> checking whether setjmp.h is POSIX.1 compatible... yes
> checking whether sigsetjmp is declared... yes
> checking whether siglongjmp is declared... yes
> checking Java support in R... present:
> interpreter : '/usr/bin/java'
> archiver    : ''
> compiler    : ''
> header prep.: ''
> cpp flags   : ''
> java libs   : '-L/usr/lib/jvm/java-6-openjdk-i386/jre/lib/i386/server
> -L/usr/lib/jvm/java-6-openjdk-i386/jre/lib/i386
> -L/usr/lib/jvm/java-6-openjdk-i386/jre/../lib/i386
> -L/usr/java/packages/lib/i386 -L/usr/lib/i386-linux-gnu/jni
> -L/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -L/usr/lib/jni -L/lib
> -L/usr/lib -ljvm'
> configure: error: Java Development Kit (JDK) is missing or not registered in
> R
> Make sure R is configured with full Java support (including JDK). Run
> R CMD javareconf
> as root to add Java support to R.
>
> If you don't have root privileges, run
> R CMD javareconf -e
> to set all Java-related variables and then install rJava.
>
> ERROR: configuration failed for package ‘rJava’
> * removing ‘/home/ecbodevan/R/i686-pc-linux-gnu-library/2.14/rJava’
>
> The downloaded packages are in
>     ‘/tmp/RtmpTC1ljU/downloaded_packages’
> Mensagens de aviso perdidas:
> In install.packages() :
>   installation of package ‘rJava’ had non-zero exit status
>
>
> Alguém sabe como resolver? Agradeço qualquer ajuda.
>
> Atenciosamente,
> Emerson.
>
> OBS.: ao tentar instalar o speedR e o rJava, eu rodava o R como "sudo". Uso
> o ubuntu.
>
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