Quando uso o Atualizador de programas para atualizar o R ele me retorna a seguinte mensagem:
"Verifique se você está utilizando repositórios de terceiros. Se estiver, desabilite-os, já que normalmente são fonte de problemas.
Além disso, execute o seguinte comando em um Terminal: apt-get install -f"
Rodo o comando 'apt-get install -f' no terminal e ele retorna o seguinte:
"luciano@luciano:~$ apt-get install -f
E: Não foi possível abrir arquivo de trava /var/lib/dpkg/lock - open (13: Permissão negada)
E: Não foi possível criar acesso exclusivo ao directório de administração (/var/lib/dpkg/), é root?"
já quando eu tento instalar o pacote 'vegan'
Veja o que acontece:
> install.packages('vegan')
Installing package into ‘/home/luciano/R/i686-pc-linux-gnu-library/3.0’
(as ‘lib’ is unspecified)
tentando a URL 'http://cran.rstudio.com/src/contrib/vegan_2.0-9.tar.gz'
Content type 'application/x-gzip' length 1939696 bytes (1.8 Mb)
URL aberta
==================================================
downloaded 1.8 Mb
* installing *source* package ‘vegan’ ...
** package ‘vegan’ successfully unpacked and MD5 sums checked
** libs
gfortran -fpic -O3 -pipe -g -c cepin.f -o cepin.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c data2hill.c -o data2hill.o
gfortran -fpic -O3 -pipe -g -c decorana.f -o decorana.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c goffactor.c -o goffactor.o
gfortran -fpic -O3 -pipe -g -c monoMDS.f -o monoMDS.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c nestedness.c -o nestedness.o
gfortran -fpic -O3 -pipe -g -c ordering.f -o ordering.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pnpoly.c -o pnpoly.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c stepacross.c -o stepacross.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c vegdist.c -o vegdist.o
gcc -std=gnu99 -shared -o vegan.so cepin.o data2hill.o decorana.o goffactor.o monoMDS.o nestedness.o ordering.o pnpoly.o stepacross.o vegdist.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR
installing to /home/luciano/R/i686-pc-linux-gnu-library/3.0/vegan/libs
** R
** data
** inst
** preparing package for lazy loading
Error : package ‘lattice’ was built before R 3.0.0: please re-install it
ERROR: lazy loading failed for package ‘vegan’
* removing ‘/home/luciano/R/i686-pc-linux-gnu-library/3.0/vegan’
Warning in install.packages :
installation of package ‘vegan’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpBQbvDv/downloaded_packages’
ok, tento instalar o lattice e mas o erro continua.
Instalando o pacote lme4 o erro final é o seguinte:
installing to /home/luciano/R/i686-pc-linux-gnu-library/3.0/Rcpp/libs
** R
** inst
** preparing package for lazy loading
Error : package ‘codetools’ was built before R 3.0.0: please re-install it
Error : unable to load R code in package ‘Rcpp’
ERROR: lazy loading failed for package ‘Rcpp’
* removing ‘/home/luciano/R/i686-pc-linux-gnu-library/3.0/Rcpp’
Warning in install.packages :
installation of package ‘Rcpp’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘minqa’
* removing ‘/home/luciano/R/i686-pc-linux-gnu-library/3.0/minqa’
Warning in install.packages :
installation of package ‘minqa’ had non-zero exit status
ERROR: dependency ‘Rcpp’ is not available for package ‘RcppEigen’
* removing ‘/home/luciano/R/i686-pc-linux-gnu-library/3.0/RcppEigen’
Warning in install.packages :
installation of package ‘RcppEigen’ had non-zero exit status
ERROR: dependencies ‘minqa’, ‘Rcpp’, ‘RcppEigen’ are not available for package ‘lme4’
* removing ‘/home/luciano/R/i686-pc-linux-gnu-library/3.0/lme4’
Warning in install.packages :
installation of package ‘lme4’ had non-zero exit status
The downloaded source packages are in
‘/tmp/RtmpBQbvDv/downloaded_packages’
Abraços,
Luciano