<div>Colegas,</div>
<div> estou iniciando o aprendizado com a plataforma R. Alguém tem dicas, ou sumário dos principais comandos e funções para iniciantes? Obrigada! Cláudia christina, ouvinte mestrado Epidemiologia/saude coletiva/IMS/UERJ<br>
<br></div>
<div class="gmail_quote">Em 1 de abril de 2011 11:29, Emmanuel Arnhold <span dir="ltr"><<a href="mailto:emmanuelarnhold@yahoo.com.br">emmanuelarnhold@yahoo.com.br</a>></span> escreveu:<br>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 16pt"><font face="Times New Roman"># Colegas ... no exemplo abaixo tento realizar uma análise do desdobramento (via glht:multcomp) do fator Proteína dentro do nível L1 e L2 do fator Linhagens.</font></span>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 16pt"><font face="Times New Roman">#Quem tiver um tempo e interesse gostaria que desse uma olhada e me desse uma opinião ou uma forma mais fácil de fazer o desdobramento</font></span>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">Proteína</font></span></p></td></tr></tbody></table></div>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">Linhagens</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">Peso</font></span></p></td></tr>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p1</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L1</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">1.6</font></span></p></td></tr>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p1</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L1</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">1.7</font></span></p></td></tr>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p1</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L2</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.3</font></span></p></td></tr>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p1</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L2</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.2</font></span></p></td></tr>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p2</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L1</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">1.9</font></span></p></td></tr>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p2</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L1</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p2</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L2</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.2</font></span></p></td></tr>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p2</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L2</font></span></p></td>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.3</font></span></p></td></tr>
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<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p3</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L1</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.3</font></span></p></td></tr>
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<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p3</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L1</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.4</font></span></p></td></tr>
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<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p3</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L2</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.3</font></span></p></td></tr>
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<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">p3</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">L2</font></span></p></td>
<td style="BORDER-RIGHT: #ece9d8; PADDING-RIGHT: 3.5pt; BORDER-TOP: #ece9d8; PADDING-LEFT: 3.5pt; MIN-HEIGHT: 11.35pt; PADDING-BOTTOM: 0cm; BORDER-LEFT: #ece9d8; PADDING-TOP: 0cm; BORDER-BOTTOM: #ece9d8; BACKGROUND-COLOR: transparent" valign="bottom" nowrap>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span style="FONT-SIZE: 11pt"><font face="Times New Roman">2.3</font></span></p></td></tr></tbody></table>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman"></font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US"><font size="3"><font face="Times New Roman">y=read.table(<span style="COLOR: black">"clipboard", h=T)</span></font></font></span>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US" style="COLOR: black"><font face="Times New Roman" size="3"> </font></span>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3">attach(y)</font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3"> </font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3">m=aov(Peso~Proteína+Linhagens+Proteína*Linhagens )</font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3">anova(m)</font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3"> </font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font size="3"><font face="Times New Roman"><span> </span># análise via agricolae</font></font></b>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font face="Times New Roman" size="3"> </font></b>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font face="Times New Roman" size="3">require(agricolae)</font></b>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3"></font><pre><span style="COLOR: black">df<-df.residual(m)</span></pre><pre><span style="COLOR: black">MSError<-deviance(m)/ df.residual(m)</span></pre>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3"> </font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font face="Times New Roman" size="3"> </font></b>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font size="3"><font face="Times New Roman">#Melhor teor de proteína dentro da linhagem 1</font></font></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3">with(subset(y, Linhagens == "L1"), HSD.test(Peso,Proteína, df,<span> </span>MSError, group=F))</font>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font face="Times New Roman" size="3">#Melhor teor de proteína dentro da linhagem 2</font></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman" size="3">with(subset(y, Linhagens == "L2"), HSD.test(Peso,Proteína, df,<span> </span>MSError, group=F))</font>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font size="3"><font face="Times New Roman"># análise via multcomp</font></font></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font size="3"><font face="Times New Roman">require(multcomp)</font></font></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US"><font size="3"><font face="Times New Roman">a=subset(y, Linhagens == "L1")</font></font></span>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US"><font size="3"><font face="Times New Roman">b=subset(y, Linhagens == "L2")</font></font></span>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font size="3"><font face="Times New Roman"><span lang="EN-US">#</span><b>#Melhor teor de proteína dentro da linhagem 1, OK!!!!</b></font></font>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font size="3"><font face="Times New Roman"><span lang="EN-US">y1=with(a, glht (m,<span> </span>linfct = mcp(</span>Proteína<span lang="EN-US"> = "Tukey" )))</span></font></font>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font face="Times New Roman" size="3">#Melhor teor de proteína dentro da linhagem 2, RODA DENTRO DA LINHAGEM 1?????</font></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font size="3"><font face="Times New Roman"><span lang="EN-US">y2=with(b, glht (m,<span> </span>linfct = mcp(</span>Proteína<span lang="EN-US"> ="Tukey")))</span></font></font>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><span lang="EN-US" style="FONT-SIZE: 14pt"><font face="Times New Roman">#Criei um sistema que segue abaixo. Consiste em trocar os códigos dos níveis do fator Linhagens</font></span></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><font size="3"><font face="Times New Roman">Linhagens=c('L2', 'L2', 'L1', 'L1', 'L2', 'L2', 'L1', 'L1', 'L2', 'L2', 'L1', 'L1')</font></font></b>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font size="3"><font face="Times New Roman"><span lang="EN-US">Linhagens=as.factor(</span><b>Linhagens)</b></font></font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US"><font size="3"><font face="Times New Roman">y=data.frame(Proteína, Linhagens, Peso)</font></font></span>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US"><font size="3"><font face="Times New Roman">a=subset(y, Linhagens == "L1")</font></font></span>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><span lang="EN-US"><font size="3"><font face="Times New Roman">m2=aov(Peso~Proteína+Linhagens+Proteína*Linhagens)</font></font></span>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font size="3"><font face="Times New Roman"><b>#Melhor teor de proteína dentro da linhagem 2, OK!!! Agora temos o resultado correto!!!</b><span lang="EN-US"></span></font></font>
<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font size="3"><font face="Times New Roman"><span lang="EN-US">y1=with(a, glht (m2,<span> </span>linfct = mcp(</span>Proteína<span lang="EN-US"> = "Tukey" )))</span></font></font>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><span lang="EN-US" style="FONT-SIZE: 18pt"><font face="Times New Roman">Perguntas.</font></span></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><span lang="EN-US" style="FONT-SIZE: 18pt"><font face="Times New Roman">Alguém tem uma solução mais fácil? Prática?</font></span></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><font face="Times New Roman"><b><span lang="EN-US" style="FONT-SIZE: 18pt">Como</span></b><b><span lang="EN-US" style="FONT-SIZE: 18pt"> trocar o código dos níveis dos fatores de maneira mais fácil?</span></b></font>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><span lang="EN-US" style="FONT-SIZE: 18pt"><font face="Times New Roman">Obrigado desde já por qualquer colaboração.</font></span></b>
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<p class="MsoNormal" style="MARGIN: 0cm 0cm 0pt"><b><span lang="EN-US" style="FONT-SIZE: 18pt"><font face="Times New Roman">Emmanuel Arnhold</font></span></b>
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