[R-br] ERRO ao instalar pacote rJava

Emerson Cotta Bodevan bodevan.ec em gmail.com
Segunda Outubro 29 14:15:14 BRST 2012


Prezados,

minha intenção é instalar o pacote speedR. No entanto, ao tentar
instalá-lo, aparece a mensagem de que está faltando o rJava.

Bom... ao tentar instalar o rJava aparece a mensagem abaixo:

> install.packages()
Carregando a interface Tcl/Tk ... pronto
--- Please select a CRAN mirror for use in this session ---
Installing package(s) into
‘/home/ecbodevan/R/i686-pc-linux-gnu-library/2.14’
(as ‘lib’ is unspecified)
tentando a URL 'http://cran-r.c3sl.ufpr.br/src/contrib/rJava_0.9-3.tar.gz'
Content type 'application/x-gzip' length 537153 bytes (524 Kb)
URL aberta
==================================================
downloaded 524 Kb

* installing *source* package ‘rJava’ ...
** package ‘rJava’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
configure: checking whether gcc -std=gnu99 supports static inline...
yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver    : ''
compiler    : ''
header prep.: ''
cpp flags   : ''
java libs   : '-L/usr/lib/jvm/java-6-openjdk-i386/jre/lib/i386/server
-L/usr/lib/jvm/java-6-openjdk-i386/jre/lib/i386
-L/usr/lib/jvm/java-6-openjdk-i386/jre/../lib/i386
-L/usr/java/packages/lib/i386 -L/usr/lib/i386-linux-gnu/jni
-L/lib/i386-linux-gnu -L/usr/lib/i386-linux-gnu -L/usr/lib/jni -L/lib
-L/usr/lib -ljvm'
*configure: error: Java Development Kit (JDK) is missing or not registered
in R
Make sure R is configured with full Java support (including JDK). Run
R CMD javareconf
as root to add Java support to R.*

If you don't have root privileges, run
R CMD javareconf -e
to set all Java-related variables and then install rJava.

*ERROR: configuration failed for package ‘rJava’
* removing ‘/home/ecbodevan/R/i686-pc-linux-gnu-library/2.14/rJava’
*
The downloaded packages are in
    ‘/tmp/RtmpTC1ljU/downloaded_packages’
Mensagens de aviso perdidas:
In install.packages() :
  installation of package ‘rJava’ had non-zero exit status


Alguém sabe como resolver? Agradeço qualquer ajuda.

Atenciosamente,
Emerson.

OBS.: ao tentar instalar o speedR e o rJava, eu rodava o R como "sudo". Uso
o ubuntu.
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